refactor: migrate from Bun.Glob to npm glob package

Replace Bun.Glob usage with a new Glob utility wrapper around the npm 'glob' package.
This moves us off Bun-specific APIs toward standard Node.js compatible solutions.

Changes:
- Add new src/util/glob.ts utility module with scan(), scanSync(), and match()
- Default include option is 'file' (only returns files, not directories)
- Add symlink option (default: false) to control symlink following
- Migrate all 12 files using Bun.Glob to use the new Glob utility
- Add comprehensive tests for the glob utility

Breaking changes:
- Removed support for include: 'dir' option (use include: 'all' and filter manually)
- symlink now defaults to false (was true in most Bun.Glob usages)

Files migrated:
- src/util/log.ts
- src/util/filesystem.ts
- src/tool/truncation.ts
- src/session/instruction.ts
- src/storage/json-migration.ts
- src/storage/storage.ts
- src/project/project.ts
- src/cli/cmd/tui/context/theme.tsx
- src/config/config.ts
- src/tool/registry.ts
- src/skill/skill.ts
- src/file/ignore.ts

packages/opencode/src/util/glob.ts

@@ -0,0 +1,34 @@
+import { glob, globSync, type GlobOptions } from "glob"
+import { minimatch } from "minimatch"
+
+export namespace Glob {
+  export interface Options {
+    cwd?: string
+    absolute?: boolean
+    include?: "file" | "all"
+    dot?: boolean
+    symlink?: boolean
+  }
+
+  function toGlobOptions(options: Options): GlobOptions {
+    return {
+      cwd: options.cwd,
+      absolute: options.absolute,
+      dot: options.dot,
+      follow: options.symlink ?? false,
+      nodir: options.include === "file",
+    }
+  }
+
+  export async function scan(pattern: string, options: Options = {}): Promise<string[]> {
+    return glob(pattern, toGlobOptions(options)) as Promise<string[]>
+  }
+
+  export function scanSync(pattern: string, options: Options = {}): string[] {
+    return globSync(pattern, toGlobOptions(options)) as string[]
+  }
+
+  export function match(pattern: string, filepath: string): boolean {
+    return minimatch(filepath, pattern, { dot: true })
+  }
+}